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Mpox resources for SF providers

San Francisco City Clinic

Report all suspect mpox cases to SFDPH


All suspect mpox cases must be reported within 1 working day.
The reporting method is different based on the suspected clade:

Clade I is suspected

Report via phone:

  • Weekdays: Call 628-217-6688
  • Weekends and holidays: Call 628-217-6100 and follow instructions to page the on-call physician.

Clade II is suspected

Report via Confidential Morbidity Report form (CMR) by email or fax:

  • Email the CMR to DPH-STIReactorDesk@sfdph.org
  • Fax to (628) 217-6603 and write “suspect mpox” in the disease field at the top of the form.

Clade I mpox resources

On April 14, 2026, the first clade I mpox case in San Francisco was confirmed. The case occurred in an unvaccinated adult. The individual reported close contact with someone who traveled internationally to an area where clade I mpox is circulating.

Find more information about clade I mpox for San Francisco providers.

Vaccination guidance

Vaccine supply

The manufacturer of mpox vaccine, Bavarian Nordic, commercially launched the product in April 2024. Jynneos is available for clinics, pharmacies, and health systems to purchase from their usual vaccine distributors. There is no shortage at this time. 

Please check sf.gov/mpox for where vaccine can be obtained.  We recommend calling the location to check availability before going.

Insurance coverage

Most insurance plans cover the cost of Jynneos vaccination for members who meet CDC eligibility criteria.

Eligibility

CDC eligibility criteria for mpox vaccination have been published. Please note that SFDPH eligibility for mpox vaccine includes additional criteria beyond the CDC criteria.

Jynneos is FDA-approved for adults, to be given via the subcutaneous route.  

An FDA Emergency Use Authorization (EUA) lists two additional indications for Jynneos:

  1. Subcutaneous administration in children under 18 years of age.  There is no lower limit to the age of children who can receive Jynneos and the dosage is the same as the adult dose (0.5 mL).
  2. Intradermal administration in adults.

Administration

Jynneos dosing is generally provided to adults as 0.5mL subcutaneous administration, while 0.1mL intradermal administration remains as a dose-sparing option if product shortages arise. Pediatric dosing is solely via the subcutaneous route. 

If intradermal administration is used, this involves injecting the vaccine superficially between the epidermis and the hypodermis layers of the skin, typically of the volar aspect (inner side) of the forearm. If the volar aspect of the forearm is not an option (e.g., strong patient preference), intradermal administration of vaccine may be performed at the upper back below the scapula or at the deltoid.

Process for minor consent to receive mpox vaccine

See SFDPH minor consent guidance for the process by which minors ages 12 years and older may consent to receive Jynneos vaccine.

Contact us for help with mpox vaccination

Treatment guidance

Approach to most patients

Supportive care and symptomatic treatment is sufficient for most patients. This includes pain relievers and benzocaine/lidocaine gels for painful proctitis. In rare cases a patient may need pain management beyond over the counter pain relivers.

There is no FDA-approved treatment for clade I or clade II mpox infection.

Tecovirimat (TPOXX) monotherapy was not found to be effective for patients with mild to moderate mpox in the STOMP Trial. The trial was stopped in November 2024 after an interim analysis showed that tecovirimat, while safe, did not shorten the time to lesion resolution or reduce pain compared to placebo among persons with mild to moderate clade II mpox.

Approach to patients with severe immunocomprise or at risk for severe disease

For patients with severe immunocompromise or who are at risk for severe disease, consider use of tecovirimat in combination with other therapeutics, such as brincidofovir.

Patients at risk for severe disease include:

  • Patients with immunocompromising conditions or on immunosuppressive medications
  • Patients with protracted or life-threatening manifestations of mpox
  • Patients with active skin conditions that place them at higher risk for disseminated infection
  • Pregnant and lactating patients
  • Children

How to prescribe and acquire therapeutics

Tecovirimat is available through an Expanded Access Investigational New Drug (EA-IND) protocol for the treatment of mpox for patients who meet CDC criteria (e.g., persons with or at high risk for protracted or life-threatening diseases, pregnant or lactating persons, and children).

How to prescribe tecovirimat

  1. Review the Expanded Access Investigational New Drug (EA-IND) protocol to check that your patient meets eligibility criteria.
  2. Register on the CDC TPOXX IND Registry the first time you prescribe tecovirimat.
  3. Fill out all required forms listed on the CDC website each time you prescribe tecovirimat.
  4. Acquire tecovirimat in your practice. If your practice does not already stock tecovirimat, contact us to request it for your patient.

How to prescribe brincidofivir or other therapeutics

Contact us for help with therapeutics

Testing guidance


Test for the virus and the clade

Mpox is diagnosed using real-time PCR tests performed on lesion swabs. When testing for monkeypox virus, order at minimum the following:

  1. Non-variola orthopoxvirus (NVO) PCR or Monkeypox virus PCR, and
  2. Clade II monkeypox virus PCR

Both tests can be performed on the same set of 2 swabs.


Ordering Clade II monkeypox PCR in addition to NVO PCR or Monkeypox virus PCR enables identification of suspected clade I mpox. Clade II monkeypox testing is not currently available via Labcorp; consider using another laboratory for this test.

  • If your patient's lesion swabs return NVO positive and clade II negative, contact SFDPH to arrange for clade I testing.

Learn more about mpox diagnostic testing from the CDC.

Swab lesions vigorously, but do not unroof them

  • Vigorous swabbing ensures enough cells are available for testing.
  • Unroofing, aspirating, or lancing lesions is not recommended due to the risk for sharps injury.

Learn more about specimen collection from the CDC.

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More sexual health resources for providers

Learn about disease reporting in SF, find clinical guidelines and toolkits, sign up for health alerts, and see epidemiological data and reports.See more resources for providers

About

San Francisco City Clinic is a trusted source for sexual health services and information, known for our experienced professionals and our commitment to delivering compassionate, high-quality care for over 100 years.

Our mission is to improve our community’s sexual health by preventing, diagnosing, and treating sexually transmitted infections (STIs) and HIV, and preventing unintended pregnancy.

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Contact information

Address

San Francisco City Clinic356 7th Street
San Francisco, CA 94102
Get directions

Monday, Wednesday, Friday
8:00 am to 4:00 pm

Tuesday
1:00 pm to 6:00 pm

Thursday
8:00 am to 11:00 am
1:00 pm to 4:00 pm

Walk-ins may end earlier for some services.

We are closed weekends and holidays.

Phone

City Clinic main phone number628-217-6600

Additional info

Medical leadership

Oliver Bacon, MD, MPH: 628-217-6658
Medical Director, City Clinic
San Francisco Department of Public Health

Franco Chevalier, MD, MPH: 628-217-6605
Deputy Medical Director, City Clinic
San Francisco Department of Public Health

Stephanie Cohen, MD, MPH: 628-217-6674
Director, STI/HIV Branch
Population Health Division
San Francisco Department of Public Health

Julia Janssen, MD: 628-217-6074
Deputy Director, STI/HIV Branch
Population Health Division
San Francisco Department of Public Health